Core transcriptome: subset of Mlig_RNA_3_7_DV1_v3 transcriptome assembly with filtered out alterntively spliced forms. Should be used for most purposes. Mlig_RNA_3_7_DV1.v3.coregenes.bestORF.gff3 - transcriptome assembly Mlig_RNA_3_7_DV1_v3, genes including ORF prediction by TransDecoder, GFF3 format. Mlig_RNA_3_7_DV1.v3.coregenes.gtf transcriptome assembly Mlig_RNA_3_7_DV1_v3, genes, GTF format. Mlig_RNA_3_7_DV1.v3.coregenes.fa - genes from transcriptional units. This is the primary file for gene sequences. Mlig_RNA_3_7_DV1.v3.coregenes.fasta - same but with annotations included in the headers. Mlig_RNA_3_7_DV1.v3.coregenes.ann - only annotations, without sequences. Mlig_RNA_3_7_DV1.v3.coregenes.bestORF.pep - encoded protein sequences. Whole transcriptome: Mlig_RNA_3_7_DV1_v3 transcriptome assembly, included redundant alternatively-spliced transcripts. Mlig_RNA_3_7_DV1.v3.genes.bestORF.gff3 - transcriptome assembly Mlig_RNA_3_7_DV1_v3, genes including ORF prediction by TransDecoder, GFF3 format. Mlig_RNA_3_7_DV1.v3.genes.gtf transcriptome assembly Mlig_RNA_3_7_DV1_v3, genes, GTF format. Mlig_RNA_3_7_DV1.v3.genes.fa - genes from transcriptional units. This is the primary file for gene sequences. Mlig_RNA_3_7_DV1.v3.genes.fasta - same but with annotations included in the headers. Mlig_RNA_3_7_DV1.v3.genes.ann - only annotations, without sequences. Mlig_RNA_3_7_DV1.v3.genes.bestORF.pep - encoded protein sequences. Transriptional Units represent initial transcriptome assembly without splitting transcripts by transsplicing/polyA boundaries. Mlig_RNA_3_7_DV1.v3.TU.gtf - transcriptome assembly Mlig_RNA_3_7_DV1_v3, transcriptional units, GTF format. Mlig_RNA_3_7_DV1.v3.TU.fa - transcriptome assembly Mlig_RNA_3_7_DV1_v3, transcriptional units, fasta format.